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How I Upgrade My Hermes Agent Team 🧠 Bot Mode, Skills & MCP Tips

Sep 11, 2026

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How I Upgrade My Hermes Agent Team: Bot Mode, Skills & MCP Tips

Level up your Hermes AI agent! Learn to integrate Zotero, Consensus, and custom skills for advanced research and knowledge management. Boost your AI team's capabilities

This article details the process of upgrading a specialist agent within the Hermes AI framework, focusing on enhancing the "researcher" agent's capabilities. The upgrade involves integrating new skills, connecting to external tools like Zotero and Consensus, and demonstrating how these improvements boost the efficiency and quality of an agent team. The ultimate goal is to create more robust and reliable AI workflows for knowledge management and research.

Enhancing the Researcher Agent

The researcher agent, a foundational member of the AI team, was upgraded to improve its ability to conduct in-depth research and collaborate with other agents. This upgrade focused on three key areas:

  1. LLM Wiki Research Skill: This skill introduces different research "lanes" or "lenses," allowing the researcher to focus on academic sources, current reality, or a combination of both. It also ensures that research findings are grounded with citations and presented in a readable report, which is then handed off to the orchestrator agent. This skill leverages the built-in "grounded citation" skill for footnote and citation tracking.
  2. Zotero Connection: This integration grants the researcher agent read-only access to a personal Zotero library, a reference management system used for collecting, organizing, and citing research sources. The researcher can search and inspect existing local library items. This connection utilizes deterministic tooling, validating information from Zotero and saving a copy in a research workspace connected to the LLM wiki. To enable this, the Zotero setting "allow other applications on this computer to communicate with Zotero" must be enabled.
  3. Consensus Academic Discovery (MCP): This skill enables the researcher to perform bounded academic paper discovery through Consensus, an external platform specializing in academic literature. The skill preserves useful paper metadata, records search limits, and requires following original links for inspection before making claims. It does not modify Zotero or the LLM wiki. The connection is established through the "MCP" (likely referring to a specific integration protocol or service) capability within Hermes, authenticated via the Consensus platform.

Workflow Integration and Testing

The upgraded researcher agent was tested within a "skills-based research team" group chat, comprising the researcher, an orchestrator, and a librarian agent. The process involved:

  • Task Delegation: The orchestrator agent was tasked with delegating a request to the researcher for a combined report on "agentic AI safety." This report was to compare and contrast academic research from Consensus with existing knowledge in Zotero.
  • Research Execution: The researcher agent executed the task, querying both Zotero and Consensus. It identified relevant papers from Zotero, including sources on "memory poisoning," and discovered academic papers through Consensus.
  • Quality Assurance: The researcher presented a markdown report to the orchestrator. The orchestrator performed a quality assurance check, requesting minor provenance corrections for details from Consensus and Zotero.
  • Librarian Ingestion: Upon approval, the orchestrator passed the report to the librarian agent. The librarian reviewed the report, proposed its inclusion in the LLM wiki, and connected the new concept of "agentic memory poisoning" to existing entries like "agentic memory" and "multi-agent workflows." The librarian's process includes a "review gated ingest" and a "human in the loop" review skill.

Outcomes and Future Directions

The upgraded researcher agent demonstrated a significant improvement in the quality and depth of research. The integration with Zotero and Consensus provided access to a broader and more credible set of sources. The collaborative workflow between the researcher, orchestrator, and librarian resulted in a well-grounded report that was successfully ingested into the LLM wiki.

Future enhancements planned include:

  • Automation: Implementing a "goal" feature to allow the researcher to run on a loop or schedule weekly updates.
  • Efficiency: Improving the efficiency and consistency of handoffs and checks between agents.
  • Scalability: Utilizing the Hermes Kanban feature and upgrading the orchestrator agent with more tools to create a reproducible workflow for scaling agent interactions.

Introduction to Agent Upgrades

Introduces the concept of upgrading a specialist agent, specifically the researcher, in Hermes. Explains the goal is to enhance its capabilities by integrating external tools and custom skills to improve task performance and team collaboration.

  • The video focuses on upgrading a specialist researcher agent in Hermes.
  • The upgrade aims to improve task performance and team collaboration.
  • The process involves giving the agent reusable research methods, Zotero access, and Consensus integration.
  • The goal is to enhance the quality of reports produced by the agent.

Installing Custom Skills

Details the three custom skills being added to the researcher agent: LLM wiki research for structured research lanes, Zotero connection for accessing personal research libraries, and Consensus academic discovery for finding new academic papers.

  • Three new skills are introduced: LLM wiki research, Zotero connection, and Consensus academic discovery.
  • LLM wiki research allows for different research lanes (academic, current reality, combined).
  • Zotero connection grants access to the user's existing reference library.
  • Consensus academic discovery enables searching for new academic literature.

LLM Wiki Research Skill

Explains the LLM wiki research skill, its different research modes (balanced, academic, current reality, combined), and how it leverages the grounded citation skill for proper referencing. It also clarifies that this skill does not directly write to the LLM wiki.

  • The LLM wiki research skill offers balanced, academic, current reality, and combined research modes.
  • It utilizes the grounded citation skill for footnotes and tracking sources.
  • The researcher agent is directed to load this skill for relevant research tasks.
  • This skill does not directly write to the LLM wiki; that's the librarian's role.

Zotero Integration

Describes Zotero as a reference manager and explains how the Zotero readonly skill allows the Hermes researcher agent to access and inspect the user's local Zotero library without modifying it. It details the setup process and a test query.

  • Zotero is a reference manager for collecting, organizing, and citing research.
  • The Zotero readonly skill enables the agent to search and inspect the local Zotero library.
  • A safety mechanism prevents the agent from overwriting the user's Zotero data.
  • The skill uses deterministic tooling to validate information from Zotero.
  • A test query for 'agentic memory poisoning' successfully found one relevant source.

Consensus Academic Discovery (MCP)

Introduces the Consensus academic discovery skill and its MCP (Meta-Cognitive Processing) connection. This skill allows the researcher agent to perform bounded academic paper discovery through Consensus, linking to Zotero and providing metadata.

  • The Consensus academic discovery skill enables bounded academic paper discovery.
  • It connects directly to Consensus via MCP (Meta-Cognitive Processing).
  • The skill preserves useful paper metadata and requires following links to original papers.
  • It does not modify Zotero or the LLM wiki.
  • A test search for 'agentic memory poisoning' via MCP returned 20 papers.

Team Collaboration Test

Demonstrates the upgraded researcher agent in action within a group chat. The orchestrator delegates a task to the researcher to compare Zotero and Consensus findings on 'agentic AI safety', producing a combined report that is then quality-checked by the orchestrator.

  • A new group chat 'skills-based research team' is created.
  • The orchestrator delegates a task to the researcher for a combined report on 'agentic AI safety'.
  • The researcher compares Zotero findings with academic consensus findings.
  • The researcher produces a markdown report with citations.
  • The orchestrator performs a quality assurance check on the report.

Librarian Ingestion and Knowledge Management

The librarian agent reviews the researcher's report on agentic memory poisoning, ingests it into the LLM wiki, and links it to related concepts. This showcases the synergistic workflow between the researcher and librarian for knowledge management.

  • The librarian agent reviews and gates the ingest of the researcher's report.
  • The report on 'agentic memory poisoning' is added to the LLM wiki.
  • The new concept is linked to existing wiki entries like 'agentic memory'.
  • The report highlights the importance of a control layer for trusted knowledge bases.
  • The librarian improves research quality and provides paths for future research.

Conclusion and Future Outlook

Summarizes the benefits of the upgraded researcher agent, highlighting its improved research flow, access to Zotero and Consensus, and the resulting increase in credibility and quality for the entire agent team. It also touches on future steps for automation and efficiency.

  • The upgraded researcher agent has enhanced research flow and access to Zotero and Consensus.
  • This improves the credibility and quality of the entire agent team's output.
  • The process provides transparency on data sources and their connections.
  • Future steps include automating tasks with goals and improving inter-agent handoffs.
  • The next video will cover the Hermes Kanban feature for scaling workflows.